Publications

2026

  • An agricultural perspective on One Health. DOI: 10.3389/fsufs.2025.1706994
  • Data on the effect of climate change-related variables on the abundance of antibiotic resistance genes in a manure-amended soil. DOI: 10.1016/j.dib.2025.112358
  • Oxytetracycline-containing manure and mineral fertilization increase the abundance of antibiotic resistance genes in lettuce-grown soil. DOI: 10.1016/j.apsoil.2026.106843

2025

  • A Practical Framework for Environmental Antibiotic Resistance Monitoring in Freshwater Ecosystems. DOI: 10.3390/antibiotics14080840
  • Comparative analysis of planktonic and sessile microbiomes and associated resistomes in a freshwater ecosystem impacted by municipal wastewater treatment plant discharge. DOI: 10.1016/j.jhazmat.2025.139250
  • Cytotoxicity, biochemical, histological and gut microbiota changes in Eisenia fetida earthworms after exposure to different sulfamethoxazole and oxytetracycline concentrations. DOI: 10.1016/j.chemosphere.2025.144616
  • Exploring inhibition of bacterial conjugation coupling protein TrwB: novel ligands to fight antimicrobial resistance spread. DOI: 10.1021/acsomega.5c03425
  • Generating regenerative agriculture. DOI: 10.3389/fsufs.2025.1545811
  • Genomic characterization of multidrug-resistant clinical Acinetobacter baumannii isolates from a hospital in Paraguay. DOI: 10.3389/fcimb.2025.1620479

2024

  • Antimicrobials in Eisenia fetida earthworms: a comprehensive study from method development to the assessment of uptake and degradation. DOI: 10.1016/j.scitotenv.2024.171214
  • Assessment of sulfamethoxazole and oxytetracycline uptake and transformation in Eisenia fetida earthworms. DOI: 10.1016/j.scitotenv.2024.176397
  • Cross-sectional, commercial testing, and chromatographic study of the occurrence of antibiotic residues throughout an artisanal raw milk cheese production chain. DOI: 10.1016/j.foodchem.2024.138445 
  • Effects of sulfamethazine and tetracycline at molecular, cellular and tissue levels in Eisenia fetida earthworms. DOI: 10.1016/j.scitotenv.2024.175579
  • Enhanced phytoremediation of metal contaminated soils aimed at decreasing the risk of antibiotic resistance dissemination. DOI: 10.3389/fenvs.2024.1307631
  • Expanding the focus of the One Health concept: links between the Earth-system processes of the planetary boundaries framework and antibiotic resistance. DOI: 10.1515/reveh-2024-0013
  • Genomic surveillance uncovers a ten-year persistence of /40 Acinetobacter baumannii clone in a tertiary hospital in Northern Spain. DOI: 10.3390/ijms25042333
  • Integrative assessment of in situ combined bioremediation strategies applied to remediate soils spilled with sewage sludges. DOI: 10.3389/fenvs.2024.1370820
  • Multitarget and suspect-screening of antimicrobials in vegetables samples: Uptake experiments and identification of transformation products. Food Chemistry. DOI: 10.1016/j.foodchem.2024.138643
  • Perceived social risk of the next major pandemic: antibiotic resistance /Percepción social de riesgo de la próxima gran pandemia: resistencia a los antibióticos. DOI: 10.1177/21711976241280497
  • Phenotypic and genotypic characterization of antimicrobial resistances reveals the effect of the production chain in reducing resistant lactic acid bacteria in an artisanal raw ewe milk PDO cheese. DOI: 10.1016/j.foodres.2024.114308
  • Plasmid content of carbapenem resistant Acinetobacter baumannii isolates belonging to five international clones collected from hospital of Alexandria, Egypt. DOI: 10.3389/fcimb.2023.1332736
  • Shotgun metagenomic sequencing reveals the influence of artisanal dairy environments on the microbiomes, quality, and safety of Idiazabal, a raw ewe milk PDO cheese. DOI: 10.1186/s40168-024-01980-0
  • Soils: the final frontier recedes. DOI: 10.3389/fsoil.2024.1495941

2023

  • A case for the importance of following antibiotic resistant bacteria throughout the soil food web. DOI: 10.1002/bies.202300153
  • Advances in environmental toxicology in the face of emerging challenges from global contamination. DOI: 10.1016/j.chemosphere.2023.138051
  • Co-Existence of blaNDM-1, blaOXA-23, blaOXA-64, blaPER-7 and blaADC-57 in a clinical isolate of Acinetobacter baumannii from Alexandria, Egypt. DOI: 10.3390/ijms241512515
  • Development of a high-throughput platform to measure plasmid transfer frequency. DOI: 10.3389/fcimb.2023.1269732
  • Environmental risk assessment of PPP application in European soils and potential ecosystem service losses considering impacts on non-target organisms. DOI: 10.1016/j.ecoenv.2023.115577
  • Induced development of oxytetracycline tolerance in bacterial communities from soil amended with well-aged cow manure. DOI: 10.1007/s10646-023-02650-x 
  • Molecular characterization of multidrug resistant Acinetobacter baumannii clinical isolates from Alexandria, Egypt. DOI: 10.3389/fcimb.2023.1208046
  • Organic amendment treatments for antimicrobial resistance and mobile element genes risk reduction in soil-crop systems. DOI: 10.1038/s41598-023-27840-9
  • Spatio-seasonal patterns of the impact of wastewater treatment plant effluents on antibiotic resistance in river sediments. DOI: 10.1016/j.envpol.2022.120883

2022

  • Antibiotics in dairy production: Where is the problem? DOI: 10.3390/dairy3030039
  • Characterization of Microbial Shifts during the Production and Ripening of Raw Ewe Milk-Derived Idiazabal Cheese by High-Throughput Sequencing. DOI: 10.3390/biology11050769
  • Impacts of sewage sludges deposition on agricultural soils: effects upon model soil organisms. DOI: 10.1016/j.cbpc.2022.109276

2021

  • Agricultural soils amended with thermally-dried anaerobically-digested sewage sludge showed increased risk of antibiotic resistance dissemination. DOI:10.3389/fmicb.2021.666854
  • Aldibereko teknika biologikoen bitartezko lurzoru kutsatuen erremediazioa. DOI: https://doi.org/10.1387/ekaia.22319.
  • Antibiotic resistance in agricultural soil and crops associated to the application of cow manure-derived amendments from conventional and organic livestock farms. DOI: 10.3389/fvets.2021.633858
  • Application of in situ bioremediation strategies in soils amended with sewage sludges. DOI: 10.1016/j.scitotenv.2020.144099.
  • Incorporation of Antibiotics into Solid Lipid Nanoparticles: A Promising Approach to Reduce Antibiotic Resistance Emergence DOI: doi.org/10.3390/nano11051251
  • Reduction of the resistome risk from cow slurry and manure microbiomes to soil and vegetable microbiomes. DOI: 10.1111/1462-2920.15842
  • Successful remediation of soils with mixed contamination of chromium and lindane: Integration of biological and physico-chemical strategies. DOI: doi: 10.1016/j.envres.2020.110666.
  • Suspect and non-target screening: The last frontier in environmental analysis. DOI: 10.1039/d1ay00111f
  • Suspect screening workflow comparison for the analysis of organic xenobiotics in environmental water samples. DOI: 10.1016/j.chemosphere.2021.129964
  • Sustainability Assessment of Pasture-Based Dairy Sheep Systems: A Multidisciplinary and Multiscale Approach. DOI: https://www.mdpi.com/2071-1050/13/7/3994

2020

  • Application of the Sea Urchin Embryo Test in Toxicity Evaluation and Effect-Directed Analysis of Wastewater Treatment Plant Effluents. DOI: 10.1021/acs.est.0c01504.
  • Conjugative coupling proteins and the role of their domains in conjugation, secondary structure and in vivo subcellular location. DOI: 10.3389/fmolb.2020.00185
  • First Report of New Delhi Metallo-B-Lactamase-6 in a Clinical Acinetobacter baumannii Isolate From Northern Spain. DOI: doi.org/10.3389/fmicb.2020.589253
  • Focused ultrasound-based extraction for target analysis and suspect screening of organic xenobiotics in fish muscle. DOI: 10.1016/j.scitotenv.2020.139894.
  • Gentle Remediation Options for a soil with chromium (VI) and lindane mixed contamination: Biostimulation, bioaugmentation, phytoremediation and vermiremediation. DOI: 10.1016/j.heliyon.2020.e04550.
  • Mobile Genetic Elements Harboring Antibiotic Resistance Determinants in Acinetobacter baumannii Isolates From Bolivia. DOI: 10.3389/fmicb.2020.0091
  • Type IV coupling proteins as potential targets to control the dissemination of antibiotic resistance. DOI: 10.3389/fmolb.2020.00201 

2019

  • Application of sewage sludge to agricultural soil increases the abundance of antibiotic resistance genes without altering the composition of prokaryotic communities. DOI: 10.1016/j.scitotenv.2018.08.092
  • Automatic Mesofluidic System Combining Dynamic Gastrointestinal Bioaccessibility with Lab-on-Valve-Based Sorptive Microextraction for Risk Exposure of Organic Emerging Contaminants in Filter-Feeding Organisms. DOI: 10.1021/acs.analchem.8b05870.
  • Multiresidue analytical method for the determination of 41 multiclass organic pollutants in mussel and fish tissues and biofluids by liquid chromatography coupled to tandem mass spectrometry. DOI: 10.1007/s00216-018-1474-z.
  • Potential benefits and risks for soil health derived from the use of organic amendments in agriculture. DOI: 10.3390/agronomy9090542
  • Short-term stability assessment for the analysis of emerging contaminants in seawater. DOI: 10.1007/s11356-019-05172-4.
  • The application of fresh and composted horse and chicken manure affects soil quality, microbial composition and antibiotic resistance. DOI: 10.1016/j.apsoil.2018.11.005
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